PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100047180061
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family AP2
Protein Properties Length: 483aa    MW: 54056.5 Da    PI: 8.5504
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100047180061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-17169218155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  Ote100047180061|100047180061 169 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTANAAARAYDRAAIKFRG 218
                                   78*******************......55************************997 PP

2AP243.96e-14261311155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Ote100047180061|100047180061 261 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 311
                                   89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-15169227IPR016177DNA-binding domain
PfamPF008472.4E-9169218IPR001471AP2/ERF domain
SMARTSM003809.2E-31170232IPR001471AP2/ERF domain
PROSITE profilePS5103217.635170226IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-17170226IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-17261320IPR016177DNA-binding domain
CDDcd000185.99E-23261319No hitNo description
PfamPF008471.3E-9261311IPR001471AP2/ERF domain
SMARTSM003809.2E-31262325IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-16262319IPR001471AP2/ERF domain
PROSITE profilePS5103215.461262319IPR001471AP2/ERF domain
PRINTSPR003677.9E-6263274IPR001471AP2/ERF domain
PRINTSPR003677.9E-6301321IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MWDLNDSPDQ RRAEEWEGCS DDKGKRXXXX XXXXXXXXXN SSSSAVVVED GSEVEEDERG  60
SAGGGRKRSS KIFGFSVXXX XXXXXXXXXA PCAVTRQFFP VDESEMVADG GGAADFPRAH  120
WVGVKFCQSE XXXXXXXXXX XXXXXXXXXX XXXXQPMKKS RRGPRSRSSQ YRGVTFYRRT  180
GRWESHIWDC GKQVYLGGFD TANAAARAYD RAAIKFRGVE ADINFSIEDY EDDLKQMSNL  240
TKEEFVHVLR RQSTGFPRGS SKYRGVTLHK CGRWEARMGQ FLGKKYVYLG LFDTEIEAAR  300
AYDKAAIKCN GKEAVTNFDP RIYDDELKSA ESSNNAADHN LDLSLGSSGS GRAESGFRDQ  360
KKRGGYNETE TLQLLSQAHL HSPEVSSRFG HQMFGNSSSR QFSSQSYQPI HHFSGGSAAM  420
VTANAGGGKV SRNEQQQQWQ MNEAQGHAQM FANAAASSGF PSAQFRPQNW TQKNGIHPLI  480
RPS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097248.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X1
SwissprotP479271e-132AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLF6H4H71e-176F6H4H7_VITVI; Putative uncharacterized protein
STRINGVIT_07s0031g00220.t011e-175(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20192365